PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 845aa    MW: 96708.5 Da    PI: 7.3088
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54358.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.5e-2587188291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                 fY++YA+++GF++ +++s++sk+++e+++++f Csk+g+++e +k              +++  +r+  +t+Cka+++vk++ dg+w+++++ +eHnH+
  Dca54358.1  87 FYQDYARSMGFNTAIQNSRRSKTSREFIDAKFACSKYGTKREYDKGnrprvrqisnqePDSATGRRSCGKTNCKASMHVKRRMDGRWVIHSFIKEHNHD 185
                 9**************************************999999889999988775545555589999****************************** PP

        FAR1  89 lap 91 
                 l p
  Dca54358.1 186 LLP 188
                 975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2387188IPR004330FAR1 DNA binding domain
PfamPF105518.6E-28286378IPR018289MULE transposase domain
PROSITE profilePS509669.248567603IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-4577602IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-9578605IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MDIDLRLPSG EQDKHDEETH VLSNMLGSDD NLHDEEARTA LEAVVLHGNE EVTLACATTD  60
LVDFKDDVNL EPLPGMEFVS HQEAYAFYQD YARSMGFNTA IQNSRRSKTS REFIDAKFAC  120
SKYGTKREYD KGNRPRVRQI SNQEPDSATG RRSCGKTNCK ASMHVKRRMD GRWVIHSFIK  180
EHNHDLLPAQ AVSEQTRKIY AAMARHYAEY KSVIGLKNEL KSPFEKTRNL VLDPGDAKLA  240
LNFCKQMQVI NSHFFYAVEV SDDLRLKTLL WVDAKSRHDY VNFTDVISVD TTYIRNKYKI  300
PLALLVGVNQ HYQFMLLGCA IVTDESPTTY SWILQTWLQA MGGQAPKVII TDQENSFKSA  360
VSEVFPHARH CYHLWHVLGK VSENLGQVIK THDNFMTKFE KCIYRSWTDD EFEKRWQKLV  420
ARFGLDKDSD WIHSLYEDRR LWVPLYMKDT LLAGLSTVPR SESVNSYFDR YVHKRTTISE  480
FLKQYESIIQ DRYEEEARAD ADTWNKQPML KSPSPLEKHM STIYTQAVFK KFQVEILGAV  540
ACHPKRERQD DQMTTFKVRD LEKDPDFMVT WNEMKSEVSC ICRLFEYKGF LCRHAMIVLQ  600
MCGLSMIPSL YILRRWTKEA KERHLTGESS MQVSSRVQRY NDLCNRAVKL SEEGSLSQES  660
YSIAFLALDE AFSSCIAANT ACKTLSEVGT SLTHELLSIE NGSPSQSLGK TSKKKSLTKK  720
RKVNSEGEPI TAAPQDTLQP LDKLSSRPVT SLEGLYGTQQ NVQGMVQLNL MGPMSENYYG  780
SQPAIQGLGQ LNSIASGHDG YYSQQGMHGL GQMDFFRAPT NFGYGIRDEP IVRSTQLHDD  840
RHKHS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680157.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A0K9QP720.0A0A0K9QP72_SPIOL; Uncharacterized protein
STRINGVIT_03s0017g01780.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3